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Species belonging to selected taxon:
Populus trichocarpa
ABOUT THIS RECORD
ID:
MNEST052395
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10573-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACCGGAAAGTGTTTTCCGTTGACC
miRNA*
TTTCCCGGAAACCACTTTCCGGAAAAC
mismatches:
4
bulges:
2
View larger
pre-miRNA
GGAAAGTGG
TTTCCCGGAAACCACTTTCCGGAAAAC
AAACACAGCCAAAAGGGAAAACACTTTCCTGAAAACCAAGTCAAATTTTCCTTTTGACTGGAAA
GTGTTTTCCGTTAACCAGAAAGTGTTTTTCT
TTGACCGGAAAGTGTTTTCCGTTGACC
ACCTTTCC
dot-bracket secondary structure
(((((((((
((...((((((.((((((((((.(((.
((((((......((.((((((((((((((.........(((((((.......))))))))))))
))))))))).)).........))))))...)
))..)))))))))).))))))..))))
).))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10086-akr
:
2e-55
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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